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What's Shaped Like a Pear and Has Two Genomes? Check The Pond.
Researchers sequence the macronuclear genome of Tetrahymena thermophila, a model eukaryote
Surf's Up — And One Coastal Microbe Has Adapted
With new cyanobacteria genome, scientists find life really does differ at the coast
Comparative sequence analysis of S. pneumoniae TIGR 4 and a set of diverse S. pneumoniae strains.
MultiExperiment Viewer (MeV) 4.0 with Linear Expression Map (LEM) Module Released
Proteomic analysis of cell envelope-associated proteins in a vancomcyin intermediate resistant Staphylococcus aureus (VISA) strain
Comparative proteomic analysis of Staphylococcus aureus strains of the VISA phenotype with differing resistance to vancomycin
Surprising Symbiosis: Glassy-Winged Sharpshooter Eats With Friends
Like a celebrity living on mineral water, the glassy-wingedsharpshooter consumes only the dilute sap of woody plants — including grapevinesin California,which is feverishly working to prevent the insect's flight into prizedvineyards. Now, in a surprising study published in the June 6 issue of PublicLibrary of Science Biology (PLoS Biology), researchers at The Institute forGenomic Research (TIGR), the University of Arizona, and their colleagueshave discovered that the sharpshooter's deprivation diet is sneakilysupplemented by not one, but two co-dependent bacteria living inside its cells.
Gut Reaction: Researchers Define The Colon's Genome
For the first time, scientists describe the busy microbial world inside
Comparative sequence analysis of B. anthracis Ames Ancestor and a set of diverse B. anthracis strains.
Leading Department of Energy Genome Scientist to Direct Joint Marine Microbial Metagenomics Cyberinfrastructure Initiative
Dr. Paul Gilna Will Lead Moore Foundation-Funded Project Linking UC San Diego and Venter Institute
Government of Victoria, Australia and Venter Institute to Survey and Sequence Microbes in Soil and Bovine Digestive System
Environmental genomics approach expected to reveal biological diversity in lesser known ecosystems
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Back on The Road, Mar Menor to Blanes, Spain
May 7th 2010 After a successful day of sampling in Mar Menor and a great local dinner of lobster paella, Chris and I loaded up the van and got back on the road early Friday morning. We had a 757 kilometer (470 miles) drive ahead of us to arrive in Blanes to meet with a team of collaborators...
The Green Lagoon — Sampling in Albufera de Valencia
During our sampling in Spain last year Chris and I met up with Francisco Rodriguez-Valera. Francisco had some great suggestions for sampling sites and one of them was Albufera de Valencia, a shallow hypertrophic fresh water lagoon, located just 30 minutes drive south of Valencia . When...
Road Sampling Starts in Mar Menor, Spain
Before sampling was to resume on Sorcerer II, a 2 week multiple-site road sampling trip was planned. Chris Dupont arrived in Valencia a day after me, in the next two days we would load up a giant rental van and hit the road. On Wednesday May 5th we drove the 322 kilometers (200 miles) from...
Return to Sorcerer II, The Mediterranean Season
Hello everyone! On May 2nd I flew from San Diego to rejoin Sorcerer II in Valencia Spain. Sorcerer II has been in Spain since our last sample in November, during that time her crew has been very busy upgrading systems and getting the rig certified. Sorcerer II is looking great and is ready for...
Looking for a Few Good Genomes (to sequence)!
The JCVI is one of three centers funded by the National Institutes of Allergy and Infectious Disease (NIAID) to provide sequencing and genotyping services to the infectious disease community. We are continually looking for researchers who would like to have organisms of research interest to...
Influences of trace metals on biological evolution
Scientists show how trace metal chemistry and global changes in oxygen have influenced the evolution of metalloproteins and the Eukaryotes A paper is being published in PNAS this week about how the varying abundance of trace metals in the environment has influenced biological...
JCVI Scientists Recognized by ASM
Drs. Karen E. Nelson and Kenneth H. Nealson are both being recognized by the American Academy of Microbiology (ASM) tomorrow, May 26, 2010. Karen has been elected to Fellowship in the ASM. She is one of seventy-eight new members that have been selected through a peer-review process based on...
Scientist Spotlight: Hamilton O. Smith and Clyde A. Hutchison III
Two of the superstars of science at the helm of the effort to make a synthetic cell (a cell with a completely man-made set of genetic instructions) are Hamilton Smith and Clyde Hutchison, or Ham and Clyde as they are affectionately known to colleagues. Since 2003 when they started working...
Happy DNA Day!
This past March, we had a great time participating in the science programs in San Diego. We ended the month with the SD Science Festival with over 30,000 participants. It was such a busy day - I forgot to take pictures. The venue was Petco Park with hundreds of exhibits and hands-on...
Recomb - Computational Proteomics
I recently attended the Recomb satellite conference on Computational Proteomics (downloads for talk and poster) in San Diego, CA. It was a kind of homecoming for me. I was a computational proteomics researcher at UCSD as a grad student with Vineet Bafna. Many of my classmates were still there,...
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Can CRISPR help stop African Swine Fever?
Gene editing could create a successful vaccine to protect against the viral disease that has killed close to 2 million pigs globally since 2021.
Getting Under the Skin
Amid an insulin crisis, one project aims to engineer microscopic insulin pumps out of a skin bacterium.
Planet Microbe
There are more organisms in the sea, a vital producer of oxygen on Earth, than planets and stars in the universe.
The Next Climate Change Calamity?: We’re Ruining the Microbiome, According to Human-Genome-Pioneer Craig Venter
In a new book (coauthored with Venter), a Vanity Fair contributor presents the oceanic evidence that human activity is altering the fabric of life on a microscopic scale.
Lessons from the Minimal Cell
“Despite reducing the sequence space of possible trajectories, we conclude that streamlining does not constrain fitness evolution and diversification of populations over time. Genome minimization may even create opportunities for evolutionary exploitation of essential genes, which are commonly observed to evolve more slowly.”
Even Synthetic Life Forms With a Tiny Genome Can Evolve
By watching “minimal” cells regain the fitness they lost, researchers are testing whether a genome can be too simple to evolve.
Privacy concerns sparked by human DNA accidentally collected in studies of other species
Two research teams warn that human genomic “bycatch” can reveal private information
Scientists Unveil a More Diverse Human Genome
The “pangenome,” which collated genetic sequences from 47 people of diverse ethnic backgrounds, could greatly expand the reach of personalized medicine.
First human ‘pangenome’ aims to catalogue genetic diversity
Researchers release draft results from an ongoing effort to capture the entirety of human genetic variation.
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