Publications

Progressive dysbiosis of human orodigestive microbiota along the sequence of gastroesophageal reflux, Barrett's esophagus and esophageal adenocarcinoma.
International journal of cancer. 2022-11-15; 151.10: 1703-1716.
PMID: 35751398
Cellular mechanics during division of a genomically minimal cell.
Trends in cell biology. 2022-11-01; 32.11: 900-907.
PMID: 35907702
FastMix: a versatile data integration pipeline for cell type-specific biomarker inference.
Bioinformatics (Oxford, England). 2022-10-14; 38.20: 4735-4744.
PMID: 36018232
VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes.
BMC bioinformatics. 2022-10-12; 23.1: 419.
PMID: 36224545
Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations.
Environmental microbiology. 2022-10-12;
PMID: 36222155
A novel vaccine based on SARS-CoV-2 CD4+ and CD8+ T cell conserved epitopes from variants Alpha to Omicron.
Scientific reports. 2022-10-06; 12.1: 16731.
PMID: 36202985
Machine learning for cell type classification from single nucleus RNA sequencing data.
PloS one. 2022-09-23; 17.9: e0275070.
PMID: 36149937
Toward the Complete Functional Characterization of a Minimal Bacterial Proteome.
The journal of physical chemistry. B. 2022-09-15; 126.36: 6820-6834.
PMID: 36048731
SARS-CoV-2 variant spike and accessory gene mutations alter pathogenesis.
Proceedings of the National Academy of Sciences of the United States of America. 2022-09-13; 119.37: e2204717119.
PMID: 36040867

Pages