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Erin Garza is a staff scientist in the Microbial and Environmental Genomics Group at JCVI specializing in synthetic biology. Dr. Garza’s research involves genetically engineering bacteria and diatoms to produce compounds of interest, elucidating plastic degradation pathways in marine organisms, domesticating and characterizing genetic parts for DNA cloning libraries, and developing and optimizing cloning techniques for non-model organisms.
Dr. Garza has worked on numerous research projects, but her main interest involves studying the microbiome of deep-sea plastics in an attempt to locate new plastic degrading organisms and to determine the effects plastic pollution is having on the ocean and its inhabitants. Her work has even allowed her to personally travel to the bottom of the ocean using the HOV Alvin to a depth of 6,110 meters.
Dr. Garza received her master’s and PhD in microbiology from Northern Illinois University. Her graduate work involved genetically engineering biofuel pathways, like homoethanol and butanol, into Escherichia coli.
Research Priorities
Deep-sea plastisphere study
- Sampling deep-sea plastics for metagenomic and metatranscriptomic studies
- Performing plastic incubations in sea water and sediment collected from various depths to enrich for plastic degraders
- Determining DOC of sea water before and after exposure to plastic
- Performing SEM on plastic biofilms
Developing a diatom model organism Phaeodactylum tricornutum
- Characterizing gene expression under various growth conditions and determining the effects of promoter-terminator fidelity
- Building a genetic toolbox for cloning
- Using fluorescent proteins to determine protein localizations, especially those located within the carbon-concentrating mechanism
Engineering relevant marine microbes
- Developing cloning methods and DNA libraries for Alteromonas macleodii
- Designing, cloning, and characterizing plastic degradation pathways
Publications
Nucleic acids research. 2024-12-09;
MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration
Zdouc MM, Blin K, Louwen NLL, Navarro J, Loureiro C, Bader CD, Bailey CB, Barra L, Booth TJ, Bozhüyük KAJ, Cediel-Becerra JDD, Charlop-Powers Z, Chevrette MG, Chooi YH, D'Agostino PM, de Rond T, Del Pup E, Duncan KR, Gu W, Hanif N, Helfrich EJN, Jenner M, Katsuyama Y, Korenskaia A, Krug D, Libis V, Lund GA, Mantri S, Morgan KD, Owen C, Phan CS, Philmus B, Reitz ZL, Robinson SL, Singh KS, Teufel R, Tong Y, Tugizimana F, Ulanova D, Winter JM, Aguilar C, Akiyama DY, Al-Salihi SAA, Alanjary M, Alberti F, Aleti G, Alharthi SA, Rojo MYA, Arishi AA, Augustijn HE, Avalon NE, Avelar-Rivas JA, Axt KK, Barbieri HB, Barbosa JCJ, Barboza Segato LG, Barrett SE, Baunach M, Beemelmanns C, Beqaj D, Berger T, Bernaldo-Agüero J, Bettenbühl SM, Bielinski VA, Biermann F, Borges RM, Borriss R, Breitenbach M, Bretscher KM, Brigham MW, Buedenbender L, Bulcock BW, Cano-Prieto C, Capela J, Carrion VJ, Carter RS, Castelo-Branco R, Castro-Falcón G, Chagas FO, Charria-Girón E, Chaudhri AA, Chaudhry V, Choi H, Choi Y, Choupannejad R, Chromy J, Donahey MSC, Collemare J, Connolly JA, Creamer KE, Crüsemann M, Cruz AA, Cumsille A, Dallery JF, Damas-Ramos LC, Damiani T, de Kruijff M, Martín BD, Sala GD, Dillen J, Doering DT, Dommaraju SR, Durusu S, Egbert S, Ellerhorst M, Faussurier B, Fetter A, Feuermann M, Fewer DP, Foldi J, Frediansyah A, Garza EA, Gavriilidou A, Gentile A, Gerke J, Gerstmans H, Gomez-Escribano JP, González-Salazar LA, Grayson NE, Greco C, Gomez JEG, Guerra S, Flores SG, Gurevich A, Gutiérrez-García K, Hart L, Haslinger K, He B, Hebra T, Hemmann JL, Hindra H, Höing L, Holland DC, Holme JE, Horch T, Hrab P, Hu J, Huynh TH, Hwang JY, Iacovelli R, Iftime D, Iorio M, Jayachandran S, Jeong E, Jing J, Jung JJ, Kakumu Y, Kalkreuter E, Kang KB, Kang S, Kim W, Kim GJ, Kim H, Kim HU, Klapper M, Koetsier RA, Kollten C, Kovács ÁT, Kriukova Y, Kubach N, Kunjapur AM, Kushnareva AK, Kust A, Lamber J, Larralde M, Larsen NJ, Launay AP, Le NT, Lebeer S, Lee BT, Lee K, Lev KL, Li SM, Li YX, Licona-Cassani C, Lien A, Liu J, Lopez JAV, Machushynets NV, Macias MI, Mahmud T, Maleckis M, Martinez-Martinez AM, Mast Y, Maximo MF, McBride CM, McLellan RM, Bhatt KM, Melkonian C, Merrild A, Metsä-Ketelä M, Mitchell DA, Müller AV, Nguyen GS, Nguyen HT, Niedermeyer THJ, O'Hare JH, Ossowicki A, Ostash BO, Otani H, Padva L, Paliyal S, Pan X, Panghal M, Parade DS, Park J, Parra J, Rubio MP, Pham HT, Pidot SJ, Piel J, Pourmohsenin B, Rakhmanov M, Ramesh S, Rasmussen MH, Rego A, Reher R, Rice AJ, Rigolet A, Romero-Otero A, Rosas-Becerra LR, Rosiles PY, Rutz A, Ryu B, Sahadeo LA, Saldanha M, Salvi L, Sánchez-Carvajal E, Santos-Medellin C, Sbaraini N, Schoellhorn SM, Schumm C, Sehnal L, Selem N, Shah AD, Shishido TK, Sieber S, Silviani V, Singh G, Singh H, Sokolova N, Sonnenschein EC, Sosio M, Sowa ST, Steffen K, Stegmann E, Streiff AB, Strüder A, Surup F, Svenningsen T, Sweeney D, Szenei J, Tagirdzhanov A, Tan B, Tarnowski MJ, Terlouw BR, Rey T, Thome NU, Torres Ortega LR, Tørring T, Trindade M, Truman AW, Tvilum M, Udwary DW, Ulbricht C, Vader L, van Wezel GP, Walmsley M, Warnasinghe R, Weddeling HG, Weir ANM, Williams K, Williams SE, Witte TE, Rocca SMW, Yamada K, Yang D, Yang D, Yu J, Zhou Z, Ziemert N, Zimmer L, Zimmermann A, Zimmermann C, van der Hooft JJJ, Linington RG, Weber T, Medema MH
PMID: 39657789
mBio. 2024-08-14; 15.8: e0003824.
Marine bacteria Alteromonas spp. require UDP-glucose-4-epimerase for aggregation and production of sticky exopolymer
Robertson JM, Garza EA, Stubbusch AKM, Dupont CL, Hwa T, Held NA
PMID: 38958440
ACS synthetic biology. 2023-11-17; 12.11: 3215-3228.
Validating a Promoter Library for Application in Plasmid-Based Diatom Genetic Engineering
Garza EA, Bielinski VA, Espinoza JL, Orlandi K, Alfaro JR, Bolt TM, Beeri K, Weyman PD, Dupont CL
PMID: 37857380
World journal of microbiology & biotechnology. 2020-03-31; 36.4: 59.
Expression of acetaldehyde dehydrogenase (aldB) improved ethanol production from xylose by the ethanologenic Escherichia coli RM10
Manow R, Wang C, Garza E, Zhao X, Wang J, Grayburn S, Zhou S
PMID: 32236784
BMC systems biology. 2016-04-16; 10.31.
Engineering a synthetic anaerobic respiration for reduction of xylose to xylitol using NADH output of glucose catabolism by Escherichia coli AI21
Iverson A, Garza E, Manow R, Wang J, Gao Y, Grayburn S, Zhou S
PMID: 27083875
World journal of microbiology & biotechnology. 2013-07-01; 29.7: 1225-32.
Increasing reducing power output (NADH) of glucose catabolism for reduction of xylose to xylitol by genetically engineered Escherichia coli AI05
Iverson A, Garza E, Zhao J, Wang Y, Zhao X, Wang J, Manow R, Zhou S
PMID: 23435875
Journal of industrial microbiology & biotechnology. 2012-08-01; 39.8: 1101-7.
Engineering a homobutanol fermentation pathway in Escherichia coli EG03
Garza E, Zhao J, Wang Y, Wang J, Iverson A, Manow R, Finan C, Zhou S
PMID: 22776992
Journal of industrial microbiology & biotechnology. 2012-07-01; 39.7: 977-85.
Partial deletion of rng (RNase G)-enhanced homoethanol fermentation of xylose by the non-transgenic Escherichia coli RM10
Manow R, Wang J, Wang Y, Zhao J, Garza E, Iverson A, Finan C, Grayburn S, Zhou S
PMID: 22374228
Journal of industrial microbiology & biotechnology. 2011-09-01; 38.9: 1371-7.
Adaptive evolution of nontransgenic Escherichia coli KC01 for improved ethanol tolerance and homoethanol fermentation from xylose
Wang Y, Manow R, Finan C, Wang J, Garza E, Zhou S
PMID: 21188614
Biotechnology letters. 2010-01-01; 32.1: 87-96.
Metabolic evolution of non-transgenic Escherichia coli SZ420 for enhanced homoethanol fermentation from xylose
Chen K, Iverson AG, Garza EA, Grayburn WS, Zhou S
PMID: 19728107
Research Priorities
Deep-sea plastisphere study
- Sampling deep-sea plastics for metagenomic and metatranscriptomic studies
- Performing plastic incubations in sea water and sediment collected from various depths to enrich for plastic degraders
- Determining DOC of sea water before and after exposure to plastic
- Performing SEM on plastic biofilms
Developing a diatom model organism Phaeodactylum tricornutum
- Characterizing gene expression under various growth conditions and determining the effects of promoter-terminator fidelity
- Building a genetic toolbox for cloning
- Using fluorescent proteins to determine protein localizations, especially those located within the carbon-concentrating mechanism
Engineering relevant marine microbes
- Developing cloning methods and DNA libraries for Alteromonas macleodii
- Designing, cloning, and characterizing plastic degradation pathways
06-Aug-2022
Blog
Leg 2: exploring the Mid-Cayman Spreading Center
01-Aug-2022
Woods Hole Oceanographic Institution
Hunting for deep-ocean plastics
Through the Woods Hole Oceanographic Institution, National Deep Submergence Facility, JCVI's Erin Garza, Ph.D. joins a deep sea expedition to search for ocean plastics aboard the HOV Alvin.
28-Jul-2022
Blog