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Teaching Computers to Recognize Sick Guts: Machine-Learning and the Microbiome
A new proof-of-concept study by researchers from the University of California San Diego succeeded in training computers to “learn” what a healthy versus an unhealthy gut microbiome looks like based on its genetic makeup.
National Academy of Medicine Elects 80 New Members
J. Craig Venter, Ph.D. among inductees
Team of scientists uncover copper poisoning as ancient mechanism in bacterial predation by protozoa
USAID Announces Initial Results of Grand Challenge to Combat Zika
USAID Invests Over $15 Million to Accelerate Development and Deployment of 21 Innovations to Combat the Spread of Zika
Teams at Venter Institute and Synthetic Genomics, Inc. Successfully Engineer 16S rRNA using One Step Process Combining CRISPR/Cas9 Systems and Yeast Recombination Machinery
Professor Karen Nelson Receives Helmholtz International Fellow Award
Vanderbilt and the Human Vaccines Project Launch Initial Studies to Decode the Human Immune System
New initiative to accelerate the development of next-generation vaccines and immunotherapies
Leonardo da Vinci's DNA: Experts unite to shine modern light on a Renaissance genius
The Leonardo Project: Illuminating the art, life, characteristics, talents, and brilliance of one of humanity's most extraordinary figures
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Christchurch, New Zealand
Greetings from Christchurch, New Zealand, the anteroom to Antarctica. My colleagues and I have been here for several days now, running last minute errands, getting equipped with cold weather gear, and waiting for a flight south to McMurdo Station. The flight here was remarkable only in it's...
Why Antarctica, and why now?
So why are you going to Antarctica, and why are you going now? A very logical question... basically we are traveling to Antarctica to study microscopic marine plants known as phytoplankton. These organisms range in size from bacteria to diatoms to colonial algae, but all phytoplankton have two...
Trip preparations (inaugural posting!)
Well, we have less than a week left, and we are finalizing and shipping the chemicals and equipment we will need for sampling below the sea ice in the Ross Sea. We have already shipped out several hundred pounds of gear, and more await us in storage down at McMurdo Station in Antarctica....
Going west!
After saying good bye to our new friends in Rostock/Warnemünde I was looking forward to coming back to Swedish waters, this time a bit saltier, on the west coast. There are two marine field stations on the Swedish west coast belonging to The Sven Lovén Center for Marine Sciences. Our first...
In the bloom...almost
Cyanobacterial blooms during the summer are reoccurring phenomena in the Baltic Sea. This summer we have already encountered the two main species responsible the blooms, Aphanizomenon sp. and the toxin producing Nodularia spumigena (see previous posts), but so far not in the abundance that...
In the Deep
After the brief stop in my hometown we continue our journey southward in the Baltic proper. Our first sampling site was the Landsort deep, the very deepest part of the Baltic Sea (459 meters!) and a long-term monitoring and sampling site for various Swedish and international scientists...
The Midnight Sun and Fermented Fish
We returned from Abisko on Thursday July 9th around 10 p.m. The next morning was very busy for the crew as we had to put the science gear back together, prepare the boat, and do local newspaper and radio interviews. Read the interview: paper Like the transect north, our...
ROAD TRIP! Watch Out Arctic Circle...the Sorcerer II Sampling Team is Coming Your Way!
After we arrived in Luleå, Jeremy, Karolina and I started packing for our road sampling trip to Lake Torneträsk, a freshwater lake located in the Arctic Circle. Dr. Erling Norrby had contacted Dr. Christer Jonasson, the deputy director of the Abisko Scientific Research Station, to help...
Sunset at Norrbyskär
It was another beautiful morning in the Gulf of Bothnia as we left Härnösand. We stopped at another sampling site before meeting with a boat from Umeå Marine Research Station (UMF). We were greeted by UMF scientist Dr. Johan Wikner and a television crew. We docked at Norrbyskär, a...
Heading north with more daylight
After spending a couple of days visiting with my family in Stockholm, I boarded a ferry boat to Blidö and rejoined the Sorcerer II crew to head north to the Bothnian Sea. Before departing, we sampled in the bay outside Dr. Norrby’s summer house. The last days of fantastic summer weather had...
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Can CRISPR help stop African Swine Fever?
Gene editing could create a successful vaccine to protect against the viral disease that has killed close to 2 million pigs globally since 2021.
Getting Under the Skin
Amid an insulin crisis, one project aims to engineer microscopic insulin pumps out of a skin bacterium.
Planet Microbe
There are more organisms in the sea, a vital producer of oxygen on Earth, than planets and stars in the universe.
The Next Climate Change Calamity?: We’re Ruining the Microbiome, According to Human-Genome-Pioneer Craig Venter
In a new book (coauthored with Venter), a Vanity Fair contributor presents the oceanic evidence that human activity is altering the fabric of life on a microscopic scale.
Lessons from the Minimal Cell
“Despite reducing the sequence space of possible trajectories, we conclude that streamlining does not constrain fitness evolution and diversification of populations over time. Genome minimization may even create opportunities for evolutionary exploitation of essential genes, which are commonly observed to evolve more slowly.”
Even Synthetic Life Forms With a Tiny Genome Can Evolve
By watching “minimal” cells regain the fitness they lost, researchers are testing whether a genome can be too simple to evolve.
Privacy concerns sparked by human DNA accidentally collected in studies of other species
Two research teams warn that human genomic “bycatch” can reveal private information
Scientists Unveil a More Diverse Human Genome
The “pangenome,” which collated genetic sequences from 47 people of diverse ethnic backgrounds, could greatly expand the reach of personalized medicine.
First human ‘pangenome’ aims to catalogue genetic diversity
Researchers release draft results from an ongoing effort to capture the entirety of human genetic variation.
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