Publications

PLoS biology. 2005-01-01; 3.1: e13.
Sorghum genome sequencing by methylation filtration
Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
PMID: 15660154
Nucleic acids research. 2005-01-01; 33.Database issue: 5503-11.
Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage
Bishop R, Shah T, Pelle R, Hoyle D, Pearson T, Haines L, Brass A, Hulme H, Graham SP, Taracha EL, Kanga S, Lu C, Hass B, Wortman J, White O, Gardner MJ, Nene V, de Villiers EP
PMID: 16186131
Journal of bacteriology. 2005-01-01; 187.1: 366-75.
Identification of a Dichelobacter nodosus ferric uptake regulator and determination of its regulatory targets
Parker D, Kennan RM, Myers GS, Paulsen IT, Rood JI
PMID: 15601721
Nucleic acids research. 2005-01-01; 33.Database issue: D71-4.
The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes
Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J
PMID: 15608288
Genome biology. 2005-01-01; 6.1: 310.
Ways to get from plant genomes to phenomes: via yeast
Rabinowicz PD, Rensink W
PMID: 15774037
Molecular biology and evolution. 2005-01-01; 22.1: 126-34.
A potentially functional mariner transposable element in the protist Trichomonas vaginalis
Silva JC, Bastida F, Bidwell SL, Johnson PJ, Carlton JM
PMID: 15371525
Nature. 2004-12-16; 432.7019: 910-3.
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
Moran MA, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C, Brinkac L, Lewis M, Johri S, Weaver B, Pai G, Eisen JA, Rahe E, Sheldon WM, Ye W, Miller TR, Carlton J, Rasko DA, Paulsen IT, Ren Q, Daugherty SC, Deboy RT, Dodson RJ, Durkin AS, Madupu R, Nelson WC, Sullivan SA, Rosovitz MJ, Haft DH, Selengut J, Ward N
PMID: 15602564
Nucleic acids research. 2004-12-15; 32.22: e183.
Evaluation of vector-primed cDNA library production from microgram quantities of total RNA
Kuo J, Inman J, Brownstein M, Usdin TB
PMID: 15601994
Bioinformatics (Oxford, England). 2004-12-12; 20.18: 3643-6.
DAGchainer: a tool for mining segmental genome duplications and synteny
Haas BJ, Delcher AL, Wortman JR, Salzberg SL
PMID: 15247098
Genome research. 2004-12-01; 14.12: 2388-96.
Extensive and breed-specific linkage disequilibrium in Canis familiaris
Sutter NB, Eberle MA, Parker HG, Pullar BJ, Kirkness EF, Kruglyak L, Ostrander EA
PMID: 15545498

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