Publications

BMC bioinformatics. 2005-01-24; 6.16.
Efficient decoding algorithms for generalized hidden Markov model gene finders
Majoros WH, Pertea M, Delcher AL, Salzberg SL
PMID: 15667658
Oncogene. 2005-01-13; 24.3: 489-501.
Autocrine activation of an osteopontin-CD44-Rac pathway enhances invasion and transformation by H-RasV12
Teramoto H, Castellone MD, Malek RL, Letwin N, Frank B, Gutkind JS, Lee NH
PMID: 15516973
Science (New York, N.Y.). 2005-01-07; 307.5706: 105-8.
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
Seshadri R, Adrian L, Fouts DE, Eisen JA, Phillippy AM, Methe BA, Ward NL, Nelson WC, Deboy RT, Khouri HM, Kolonay JF, Dodson RJ, Daugherty SC, Brinkac LM, Sullivan SA, Madupu R, Nelson KE, Kang KH, Impraim M, Tran K, Robinson JM, Forberger HA, Fraser CM, Zinder SH, Heidelberg JF
PMID: 15637277
Science (New York, N.Y.). 2005-01-07; 307.5706: 82-6.
A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses
Hall N, Karras M, Raine JD, Carlton JM, Kooij TW, Berriman M, Florens L, Janssen CS, Pain A, Christophides GK, James K, Rutherford K, Harris B, Harris D, Churcher C, Quail MA, Ormond D, Doggett J, Trueman HE, Mendoza J, Bidwell SL, Rajandream MA, Carucci DJ, Yates JR, Kafatos FC, Janse CJ, Barrell B, Turner CM, Waters AP, Sinden RE
PMID: 15637271
BMC bioinformatics. 2005-01-05; 6.2.
Visualization of comparative genomic analyses by BLAST score ratio
Rasko DA, Myers GS, Ravel J
PMID: 15634352
PLoS biology. 2005-01-04; 3.1: e15.
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species
Fouts DE, Mongodin EF, Mandrell RE, Miller WG, Rasko DA, Ravel J, Brinkac LM, Deboy RT, Parker CT, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Sullivan SA, Shetty JU, Ayodeji MA, Shvartsbeyn A, Schatz MC, Badger JH, Fraser CM, Nelson KE
PMID: 15660156
Nucleic acids research. 2005-01-01; 33.Database issue: 5503-11.
Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage
Bishop R, Shah T, Pelle R, Hoyle D, Pearson T, Haines L, Brass A, Hulme H, Graham SP, Taracha EL, Kanga S, Lu C, Hass B, Wortman J, White O, Gardner MJ, Nene V, de Villiers EP
PMID: 16186131
Journal of bacteriology. 2005-01-01; 187.1: 366-75.
Identification of a Dichelobacter nodosus ferric uptake regulator and determination of its regulatory targets
Parker D, Kennan RM, Myers GS, Paulsen IT, Rood JI
PMID: 15601721
Nucleic acids research. 2005-01-01; 33.Database issue: D71-4.
The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes
Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J
PMID: 15608288
Molecular biology and evolution. 2005-01-01; 22.1: 126-34.
A potentially functional mariner transposable element in the protist Trichomonas vaginalis
Silva JC, Bastida F, Bidwell SL, Johnson PJ, Carlton JM
PMID: 15371525

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