Publications

Methods in molecular biology (Clifton, N.J.). 2007-01-01; 408.93-108.
Sybil: methods and software for multiple genome comparison and visualization
Crabtree J, Angiuoli SV, Wortman JR, White OR
PMID: 18314579
Nature methods. 2007-01-01; 4.1: 35-7.
Sensitive and specific method for detecting G protein-coupled receptor mRNAs
Hansen A, Chen Y, Inman JM, Phan QN, Qi ZQ, Xiang CC, Palkovits M, Cherman N, Kuznetsov SA, Robey PG, Mezey E, Brownstein MJ
PMID: 17115035
Cytogenetic and genome research. 2007-01-01; 119.3-4: 268-74.
Isolation and characterization of the highly repeated fraction of the banana genome
Hribová E, Dolezelová M, Town CD, Macas J, Dolezel J
PMID: 18253041
Genome biology. 2007-01-01; 8.3: R34.
Hawkeye: an interactive visual analytics tool for genome assemblies
Schatz MC, Phillippy AM, Shneiderman B, Salzberg SL
PMID: 17349036
Nucleic acids research. 2007-01-01; 35.Database issue: D883-7.
The TIGR Rice Genome Annotation Resource: improvements and new features
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR
PMID: 17145706
Journal of bacteriology. 2007-01-01; 189.1: 531-9.
Complete and SOS-mediated response of Staphylococcus aureus to the antibiotic ciprofloxacin
Cirz RT, Jones MB, Gingles NA, Minogue TD, Jarrahi B, Peterson SN, Romesberg FE
PMID: 17085555
Genome biology. 2007-01-01; 8.3: R264.
Evolution of allostery in the cyclic nucleotide binding module
Kannan N, Wu J, Anand GS, Yooseph S, Neuwald AF, Venter JC, Taylor SS
PMID: 18076763
Nucleic acids research. 2007-01-01; 35.Database issue: e148.
A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip whole-genome resequencing platform
Pandya GA, Holmes MH, Sunkara S, Sparks A, Bai Y, Verratti K, Saeed K, Venepally P, Jarrahi B, Fleischmann RD, Peterson SN
PMID: 18006572
BMC genomics. 2006-12-28; 7.327.
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
Campbell MA, Haas BJ, Hamilton JP, Mount SM, Buell CR
PMID: 17194304
Science (New York, N.Y.). 2006-12-22; 314.5807: 1892.
Ancient noncoding elements conserved in the human genome
Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S
PMID: 17185593

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