Publications

Proceedings of the National Academy of Sciences of the United States of America. 2024-02-06; 121.6: e2204075121.
Flexible B12 ecophysiology of Phaeocystis antarctica due to a fusion B12-independent methionine synthase with widespread homologues
Rao D, Füssy Z, Brisbin MM, McIlvin MR, Moran DM, Allen AE, Follows MJ, Saito MA
PMID: 38306482
Nature reviews. Microbiology. 2024-02-01; 22.2: 89-104.
The oral microbiome: diversity, biogeography and human health
Baker JL, Mark Welch JL, Kauffman KM, McLean JS, He X
PMID: 37700024
The New phytologist. 2024-02-01; 241.4: 1543-1558.
Two plastidial lysophosphatidic acid acyltransferases differentially mediate the biosynthesis of membrane lipids and triacylglycerols in Phaeodactylum tricornutum
You L, Połońska A, Jasieniecka-Gazarkiewicz K, Richard F, Jouhet J, Maréchal E, Banaś A, Hu H, Pan Y, Hao X, Jin H, Allen AE, Amato A, Gong Y
PMID: 38031462
Gut microbes. 2024-02-01; 16.1: 2307586.
Fungal signature differentiates alcohol-associated liver disease from nonalcoholic fatty liver disease
Viebahn G, Hartmann P, Lang S, Demir M, Zhang X, Fouts DE, Stärkel P, Schnabl B
PMID: 38298161
The Journal of investigative dermatology. 2024-02-01; 144.2: 252-262.e4.
Cross-Comparison of Inflammatory Skin Disease Transcriptomics Identifies PTEN as a Pathogenic Disease Classifier in Cutaneous Lupus Erythematosus
Aevermann BD, Di Domizio J, Olah P, Saidoune F, Armstrong JM, Bachelez H, Barker J, Haniffa M, Julia V, Juul K, Krishnaswamy JK, Litman T, Parsons I, Sarin KY, Schmuth M, Sierra M, Simpson M, Homey B, Griffiths CEM, Scheuermann RH, Gilliet M
PMID: 37598867
iScience. 2024-01-19; 27.1: 108477.
From TgO/GABA-AT, GABA, and T-263 Mutant to Conception of Toxoplasma
Lykins J, Moschitto MJ, Zhou Y, Filippova EV, Le HV, Tomita T, Fox BA, Bzik DJ, Su C, Rajagopala SV, Flores K, Spano F, Woods S, Roberts CW, Hua C, El Bissati K, Wheeler KM, Dovgin S, Muench SP, McPhillie M, Fishwick CWG, Anderson WF, Lee PJ, Hickman M, Weiss LM, Dubey JP, Lorenzi HA, Silverman RB, McLeod RL
PMID: 38205261
PloS one. 2024-01-18; 19.1: e0285093.
Coordinating virus research: The Virus Infectious Disease Ontology
Beverley J, Babcock S, Carvalho G, Cowell LG, Duesing S, He Y, Hurley R, Merrell E, Scheuermann RH, Smith B
PMID: 38236918
The ISME journal. 2024-01-08; 18.1:
Iron limitation of heterotrophic bacteria in the California Current System tracks relative availability of organic carbon and iron
Manck LE, Coale TH, Stephens BM, Forsch KO, Aluwihare LI, Dupont CL, Allen AE, Barbeau KA
PMID: 38624181
The ISME journal. 2023-12-01; 17.12: 2147-2159.
Progress and challenges in exploring aquatic microbial communities using non-targeted metabolomics
Thukral M, Allen AE, Petras D
PMID: 37857709
Nature genetics. 2023-12-01; 55.12: 2189-2199.
Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma
Chapman OS, Luebeck J, Sridhar S, Wong IT, Dixit D, Wang S, Prasad G, Rajkumar U, Pagadala MS, Larson JD, He BJ, Hung KL, Lange JT, Dehkordi SR, Chandran S, Adam M, Morgan L, Wani S, Tiwari A, Guccione C, Lin Y, Dutta A, Lo YY, Juarez E, Robinson JT, Korshunov A, Michaels JA, Cho YJ, Malicki DM, Coufal NG, Levy ML, Hobbs C, Scheuermann RH, Crawford JR, Pomeroy SL, Rich JN, Zhang X, Chang HY, Dixon JR, Bagchi A, Deshpande AJ, Carter H, Fraenkel E, Mischel PS, Wechsler-Reya RJ, Bafna V, Mesirov JP, Chavez L
PMID: 37945900

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