Publications

Nature. 2003-04-24; 422.6934: 801.
Unrestricted free access works and must continue
Salzberg S, Birney E, Eddy S, White O
PMID: 12712164
Nature. 2003-04-24; 422.6934: 859-68.
The genome sequence of the filamentous fungus Neurospora crassa
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B
PMID: 12712197
Nucleic acids research. 2003-04-15; 31.8: 2134-47.
Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae
Read TD, Myers GS, Brunham RC, Nelson WC, Paulsen IT, Heidelberg J, Holtzapple E, Khouri H, Federova NB, Carty HA, Umayam LA, Haft DH, Peterson J, Beanan MJ, White O, Salzberg SL, Hsia RC, McClarty G, Rank RG, Bavoil PM, Fraser CM
PMID: 12682364
Science (New York, N.Y.). 2003-04-11; 300.5617: 290-3.
Realizing the potential of the genome revolution: the genomes to life program
Frazier ME, Johnson GM, Thomassen DG, Oliver CE, Patrinos A
PMID: 12690188
Mechanisms of development. 2003-04-01; 120.4: 503-9.
Identification of new Xlsirt family members in the Xenopus laevis oocyte
Zearfoss NR, Chan AP, Kloc M, Allen LH, Etkin LD
PMID: 12676327
Plant molecular biology. 2003-04-01; 51.6: 859-66.
The age of the Arabidopsis thaliana genome duplication
Ermolaeva MD, Wu M, Eisen JA, Salzberg SL
PMID: 12777046
The Journal of parasitology. 2003-04-01; 89.2: 261-9.
The Schistosoma mansoni gene index: gene discovery and biology by reconstruction and analysis of expressed gene sequences
Merrick JM, Osman A, Tsai J, Quackenbush J, LoVerde PT, Lee NH
PMID: 12760639
Science (New York, N.Y.). 2003-03-28; 299.5615: 2071-4.
Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis
Paulsen IT, Banerjei L, Myers GS, Nelson KE, Seshadri R, Read TD, Fouts DE, Eisen JA, Gill SR, Heidelberg JF, Tettelin H, Dodson RJ, Umayam L, Brinkac L, Beanan M, Daugherty S, Deboy RT, Durkin S, Kolonay J, Madupu R, Nelson W, Vamathevan J, Tran B, Upton J, Hansen T, Shetty J, Khouri H, Utterback T, Radune D, Ketchum KA, Dougherty BA, Fraser CM
PMID: 12663927
Bioinformatics (Oxford, England). 2003-03-22; 19.5: 651-2.
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B, Tsai J, Quackenbush J
PMID: 12651724
Proceedings of the National Academy of Sciences of the United States of America. 2003-03-18; 100.6: 3025-6.
The independence of our genome assemblies
Adams MD, Sutton GG, Smith HO, Myers EW, Venter JC
PMID: 16576752

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