Publications

Methods in molecular biology (Clifton, N.J.). 2010-01-01; 634.215-26.
Whole genome sequencing
Ng PC, Kirkness EF
PMID: 20238084
Genome biology. 2010-01-01; 11.11: R73.
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
Lévesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S, Robideau GP, Thines M, Win J, Zerillo MM, Beakes GW, Boore JL, Busam D, Dumas B, Ferriera S, Fuerstenberg SI, Gachon CM, Gaulin E, Govers F, Grenville-Briggs L, Horner N, Hostetler J, Jiang RH, Johnson J, Krajaejun T, Lin H, Meijer HJ, Moore B, Morris P, Phuntmart V, Puiu D, Shetty J, Stajich JE, Tripathy S, Wawra S, van West P, Whitty BR, Coutinho PM, Henrissat B, Martin F, Thomas PD, Tyler BM, de Vries RP, Kamoun S, Yandell M, Tisserat N, Buell CR
PMID: 20626842
Antimicrobial agents and chemotherapy. 2010-01-01; 54.1: 103-8.
Allelic exchange and mutant selection demonstrate that common clinical embCAB gene mutations only modestly increase resistance to ethambutol in Mycobacterium tuberculosis
Safi H, Fleischmann RD, Peterson SN, Jones MB, Jarrahi B, Alland D
PMID: 19822701
Nucleic acids research. 2010-01-01; 38.Database issue: D331-5.
The Gene Ontology in 2010: extensions and refinements
Berardini TZ, Li D, Huala E, Bridges S, Burgess S, McCarthy F, Carbon S, Lewis SE, Mungall CJ, Abdulla A, Wood V, Feltrin E, Valle G, Chisholm RL, Fey P, Gaudet P, Kibbe W, Basu S, Bushmanova Y, Eilbeck K, Siegele DA, McIntosh B, Renfro D, Zweifel A, Hu JC, Ashburner M, Tweedie S, Alam-Faruque Y, Apweiler R, Auchinchloss A, Bairoch A, Barrell D, Binns D, Blatter MC, Bougueleret L, Boutet E, Breuza L, Bridge A, Browne P, Chan WM, Coudert E, Daugherty L, Dimmer E, Eberhardt R, Estreicher A, Famiglietti L, Ferro-Rojas S, Feuermann M, Foulger R, Gruaz-Gumowski N, Hinz U, Huntley R, Jimenez S, Jungo F, Keller G, Laiho K, Legge D, Lemercier P, Lieberherr D, Magrane M, O'Donovan C, Pedruzzi I, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Stanley E, Stutz A, Sundaram S, Tognolli M, Xenarios I, Harris MA, Deegan JI, Ireland A, Lomax J, Jaiswal P, Chibucos M, Giglio MG, Wortman J, Hannick L, Madupu R, Botstein D, Dolinski K, Livstone MS, Oughtred R, Blake JA, Bult C, Diehl AD, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Sitnikov D, Collmer C, Torto-Alalibo T, Laulederkind S, Shimoyama M, Twigger S, D'Eustachio P, Matthews L, Balakrishnan R, Binkley G, Cherry JM, Christie KR, Costanzo MC, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Weng S, Wong ED, Aslett M, Chan J, Kishore R, Sternberg P, Van Auke K, Khodiyar VK, Lovering RC, Talmud PJ, Howe D, Westerfield M
PMID: 19920128
Nucleic acids research. 2010-01-01; 38.Database issue: D340-5.
The comprehensive microbial resource
Davidsen T, Beck E, Ganapathy A, Montgomery R, Zafar N, Yang Q, Madupu R, Goetz P, Galinsky K, White O, Sutton G
PMID: 19892825
BMC genomics. 2009-12-22; 10.624.
Potential impact of stress activated retrotransposons on genome evolution in a marine diatom
Maumus F, Allen AE, Mhiri C, Hu H, Jabbari K, Vardi A, Grandbastien MA, Bowler C
PMID: 20028555
BMC genetics. 2009-12-18; 10.85.
Assessing the utility of whole-genome amplified serum DNA for array-based high throughput genotyping
Bucasas KL, Pandya GA, Pradhan S, Fleischmann RD, Peterson SN, Belmont JW
PMID: 20021669
Environmental science & technology. 2009-12-15; 43.24: 9519-24.
Selecting anode-respiring bacteria based on anode potential: phylogenetic, electrochemical, and microscopic characterization
Torres CI, Krajmalnik-Brown R, Parameswaran P, Marcus AK, Wanger G, Gorby YA, Rittmann BE
PMID: 20000550
PLoS genetics. 2009-12-01; 5.12: e1000786.
Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs
Wozniak RA, Fouts DE, Spagnoletti M, Colombo MM, Ceccarelli D, Garriss G, Déry C, Burrus V, Waldor MK
PMID: 20041216
Environmental microbiology reports. 2009-12-01; 1.6: 555-62.
Novel diversity of bacterial communities associated with bottlenose dolphin upper respiratory tracts
Johnson WR, Torralba M, Fair PA, Bossart GD, Nelson KE, Morris PJ
PMID: 23765934

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