Publications

Nucleic acids research. 2012-01-01; 40.Database issue: D237-41.
CharProtDB: a database of experimentally characterized protein annotations
Madupu R, Richter A, Dodson RJ, Brinkac L, Harkins D, Durkin S, Shrivastava S, Sutton G, Haft D
PMID: 22140108
PloS one. 2012-01-01; 7.5: e44224.
Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing
Lee CK, Herbold CW, Polson SW, Wommack KE, Williamson SJ, McDonald IR, Cary SC
PMID: 22970184
PloS one. 2012-01-01; 7.5: e41294.
The "most wanted" taxa from the human microbiome for whole genome sequencing
Fodor AA, DeSantis TZ, Wylie KM, Badger JH, Ye Y, Hepburn T, Hu P, Sodergren E, Liolios K, Huot-Creasy H, Birren BW, Earl AM
PMID: 22848458
Methods in molecular biology (Clifton, N.J.). 2012-01-01; 944.35-55.
From bacterial to microbial ecosystems (metagenomics)
Williamson SJ, Yooseph S
PMID: 22144147
Methods in molecular biology (Clifton, N.J.). 2012-01-01; 944.23-45.
Bioinformatics approaches and software for detection of secondary metabolic gene clusters
Fedorova ND, Moktali V, Medema MH
PMID: 23065606
PloS one. 2012-01-01; 7.5: e32219.
Identifying low pH active and lactate-utilizing taxa within oral microbiome communities from healthy children using stable isotope probing techniques
McLean JS, Fansler SJ, Majors PD, McAteer K, Allen LZ, Shirtliff ME, Lux R, Shi W
PMID: 22403637
Nucleic acids research. 2012-01-01; 40.Database issue: D593-8.
ViPR: an open bioinformatics database and analysis resource for virology research
Pickett BE, Sadat EL, Zhang Y, Noronha JM, Squires RB, Hunt V, Liu M, Kumar S, Zaremba S, Gu Z, Zhou L, Larson CN, Dietrich J, Klem EB, Scheuermann RH
PMID: 22006842
Database : the journal of biological databases and curation. 2012-01-01; 2012.bas003.
AntiFam: a tool to help identify spurious ORFs in protein annotation
Eberhardt RY, Haft DH, Punta M, Martin M, O'Donovan C, Bateman A
PMID: 22434837
PloS one. 2012-01-01; 7.5: e34064.
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
Ziemert N, Podell S, Penn K, Badger JH, Allen E, Jensen PR
PMID: 22479523
Frontiers in plant science. 2012-01-01; 3.172.
Unleashing the genome of brassica rapa
Tang H, Lyons E
PMID: 22866056

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