Publications

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2019-03-01; 68.68-76.
A novel approach for the identification and phylogenetic delineation of human Mycoplasma species and strains using genomic segment sequence analysis
Roachford OSE, Nelson KE, Mohapatra BR
PMID: 30529087
Molecular biology and evolution. 2019-03-01; 36.3: 435-446.
Lateral Gene Transfer Shapes the Distribution of RuBisCO among Candidate Phyla Radiation Bacteria and DPANN Archaea
Jaffe AL, Castelle CJ, Dupont CL, Banfield JF
PMID: 30544151
The ISME journal. 2019-03-01; 13.3: 576-587.
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
Amato KR, G Sanders J, Song SJ, Nute M, Metcalf JL, Thompson LR, Morton JT, Amir A, J McKenzie V, Humphrey G, Gogul G, Gaffney J, L Baden A, A O Britton G, P Cuozzo F, Di Fiore A, J Dominy N, L Goldberg T, Gomez A, Kowalewski MM, J Lewis R, Link A, L Sauther M, Tecot S, A White B, E Nelson K, M Stumpf R, Knight R, R Leigh S
PMID: 29995839
Microbiology resource announcements. 2019-02-28; 8.9:
Closed Genome Sequences of Clinical Neisseria gonorrhoeae Strains Obtained from Combined Oxford Nanopore and Illumina Sequencing
White RC, Torralba M, Colt K, Harrison F, Goglin K, Nguyen K, D'Souza R, Bristow CC, Ellis O, Soge OO, Klausner JD, Fouts DE
PMID: 30834380
Epigenomics. 2019-02-20;
Fine mapping and subphenotyping implicates ADRA1B gene variants in psoriasis susceptibility in a Chinese population
Fan X, Wang H, Sun L, Zheng X, Yin X, Zuo X, Peng Q, Standish KA, Cheng H, Zhang Y, Wang Z, Xiao F, Yang S, Zhang X, Schork NJ
PMID: 30785334
Nature biomedical engineering. 2019-02-07; 3.2: 147-157.
Combinatorial interactions of genetic variants in human cardiomyopathy
Deacon DC, Happe CL, Chen C, Tedeschi N, Manso AM, Li T, Dalton ND, Peng Q, Farah EN, Gu Y, Tenerelli KP, Tran VD, Chen J, Peterson KL, Schork NJ, Adler ED, Engler AJ, Ross RS, Chi NC
PMID: 30923642
Cell metabolism. 2019-02-05; 29.2: 488-500.e2.
Profound Perturbation of the Metabolome in Obesity Is Associated with Health Risk
Cirulli ET, Guo L, Leon Swisher C, Shah N, Huang L, Napier LA, Kirkness EF, Spector TD, Caskey CT, Thorens B, Venter JC, Telenti A
PMID: 30318341
eLife. 2019-01-18; 8.
Essential metabolism for a minimal cell
Breuer M, Earnest TM, Merryman C, Wise KS, Sun L, Lynott MR, Hutchison CA, Smith HO, Lapek JD, Gonzalez DJ, de Crécy-Lagard V, Haas D, Hanson AD, Labhsetwar P, Glass JI, Luthey-Schulten Z
PMID: 30657448
PLoS genetics. 2019-01-18; 15.1: e1007819.
The complex architecture and epigenomic impact of plant T-DNA insertions
Jupe F, Rivkin AC, Michael TP, Zander M, Motley ST, Sandoval JP, Slotkin RK, Chen H, Castanon R, Nery JR, Ecker JR
PMID: 30657772
ACS synthetic biology. 2019-01-15;
Direct transfer of a Mycoplasma mycoides genome to yeast is enhanced by removal of the mycoides glycerol uptake factor gene glpF
Karas BJ, Moreau N, Deernick TJ, Gibson DG, Venter JC, Smith H, Glass J
PMID: 30645947

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