Publications

Antimicrobial agents and chemotherapy. 2020-02-21; 64.3:
Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling
O'Rourke A, Beyhan S, Choi Y, Morales P, Chan AP, Espinoza JL, Dupont CL, Meyer KJ, Spoering A, Lewis K, Nierman WC, Nelson KE
PMID: 31907190
Frontiers in microbiology. 2020-02-19; 11.136.
Emerging Priorities for Microbiome Research
Cullen CM, Aneja KK, Beyhan S, Cho CE, Woloszynek S, Convertino M, McCoy SJ, Zhang Y, Anderson MZ, Alvarez-Ponce D, Smirnova E, Karstens L, Dorrestein PC, Li H, Sen Gupta A, Cheung K, Powers JG, Zhao Z, Rosen GL
PMID: 32140140
PloS one. 2020-02-19; 15.2: e0227152.
Genomic and phenotypic characterization of Burkholderia isolates from the potable water system of the International Space Station
O'Rourke A, Lee MD, Nierman WC, Everroad RC, Dupont CL
PMID: 32074104
Journal of immunology (Baltimore, Md. : 1950). 2020-02-15; 204.4: 796-809.
Type II but Not Type I IFN Signaling Is Indispensable for TLR7-Promoted Development of Autoreactive B Cells and Systemic Autoimmunity
Chodisetti SB, Fike AJ, Domeier PP, Singh H, Choi NM, Corradetti C, Kawasawa YI, Cooper TK, Caricchio R, Rahman ZSM
PMID: 31900342
Nature communications. 2020-02-14; 11.1: 884.
Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff
VanBuren R, Man Wai C, Wang X, Pardo J, Yocca AE, Wang H, Chaluvadi SR, Han G, Bryant D, Edger PP, Messing J, Sorrells ME, Mockler TC, Bennetzen JL, Michael TP
PMID: 32060277
Proceedings of the National Academy of Sciences of the United States of America. 2020-02-11; 117.6: 3053-3062.
Precision medicine integrating whole-genome sequencing, comprehensive metabolomics, and advanced imaging
Hou YC, Yu HC, Martin R, Cirulli ET, Schenker-Ahmed NM, Hicks M, Cohen IV, Jönsson TJ, Heister R, Napier L, Swisher CL, Dominguez S, Tang H, Li W, Perkins BA, Barea J, Rybak C, Smith E, Duchicela K, Doney M, Brar P, Hernandez N, Kirkness EF, Kahn AM, Venter JC, Karow DS, Caskey CT
PMID: 31980526
Synthetic biology (Oxford, England). 2020-02-05; 5.1: ysaa001.
Universal loop assembly: open, efficient and cross-kingdom DNA fabrication
Pollak B, Matute T, Nuñez I, Cerda A, Lopez C, Vargas V, Kan A, Bielinski V, von Dassow P, Dupont CL, Federici F
PMID: 32161816
Hepatology (Baltimore, Md.). 2020-02-01; 71.2: 522-538.
Intestinal Fungal Dysbiosis and Systemic Immune Response to Fungi in Patients With Alcoholic Hepatitis
Lang S, Duan Y, Liu J, Torralba MG, Kuelbs C, Ventura-Cots M, Abraldes JG, Bosques-Padilla F, Verna EC, Brown RS, Vargas V, Altamirano J, Caballería J, Shawcross D, Lucey MR, Louvet A, Mathurin P, Garcia-Tsao G, Ho SB, Tu XM, Bataller R, Stärkel P, Fouts DE, Schnabl B
PMID: 31228214
The Plant cell. 2020-02-01; 32.2: 352-373.
Reprogramming of Root Cells during Nitrogen-Fixing Symbiosis Involves Dynamic Polysome Association of Coding and Noncoding RNAs
Traubenik S, Reynoso MA, Hobecker K, Lancia M, Hummel M, Rosen B, Town C, Bailey-Serres J, Blanco F, Zanetti ME
PMID: 31748328
mSphere. 2020-01-29; 5.1:
Influence of Substrate Concentration on the Culturability of Heterotrophic Soil Microbes Isolated by High-Throughput Dilution-to-Extinction Cultivation
Bartelme RP, Custer JM, Dupont CL, Espinoza JL, Torralba M, Khalili B, Carini P
PMID: 31996418

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