Publications

Antimicrobial agents and chemotherapy. 2007-02-01; 51.2: 535-42.
Contribution of target gene mutations and efflux to decreased susceptibility of Salmonella enterica serovar typhimurium to fluoroquinolones and other antimicrobials
Chen S, Cui S, McDermott PF, Zhao S, White DG, Paulsen I, Meng J
PMID: 17043131
BMC genomics. 2007-01-17; 8.18.
Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome
Moskal WA, Wu HC, Underwood BA, Wang W, Town CD, Xiao Y
PMID: 17229318
Science (New York, N.Y.). 2007-01-12; 315.5809: 207-12.
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis
Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, Van de Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Müller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu CL, Osoegawa K, de Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik SB, Logsdon JM, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu CH, Lee YS, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ
PMID: 17218520
Nucleic acids research. 2007-01-01; 35.Database issue: D883-7.
The TIGR Rice Genome Annotation Resource: improvements and new features
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR
PMID: 17145706
Nucleic acids research. 2007-01-01; 35.Database issue: e148.
A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip whole-genome resequencing platform
Pandya GA, Holmes MH, Sunkara S, Sparks A, Bai Y, Verratti K, Saeed K, Venepally P, Jarrahi B, Fleischmann RD, Peterson SN
PMID: 18006572
Journal of clinical microbiology. 2007-01-01; 45.1: 39-46.
Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis
Alland D, Lacher DW, Hazbón MH, Motiwala AS, Qi W, Fleischmann RD, Whittam TS
PMID: 17079498
Methods in molecular biology (Clifton, N.J.). 2007-01-01; 408.93-108.
Sybil: methods and software for multiple genome comparison and visualization
Crabtree J, Angiuoli SV, Wortman JR, White OR
PMID: 18314579
Current pharmaceutical design. 2007-01-01; 13.14: 1415-36.
Computational and experimental approaches for modeling gene regulatory networks
Goutsias J, Lee NH
PMID: 17504165
Genome biology. 2007-01-01; 8.3: R34.
Hawkeye: an interactive visual analytics tool for genome assemblies
Schatz MC, Phillippy AM, Shneiderman B, Salzberg SL
PMID: 17349036
Journal of bacteriology. 2007-01-01; 189.1: 52-64.
Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1
Rasko DA, Rosovitz MJ, Økstad OA, Fouts DE, Jiang L, Cer RZ, Kolstø AB, Gill SR, Ravel J
PMID: 17041058

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