Publications

Eukaryotic cell. 2009-01-01; 8.1: 104-15.
Transcriptional profiling identifies a role for BrlA in the response to nitrogen depletion and for StuA in the regulation of secondary metabolite clusters in Aspergillus fumigatus
Twumasi-Boateng K, Yu Y, Chen D, Gravelat FN, Nierman WC, Sheppard DC
PMID: 19028996
Nucleic acids research. 2009-01-01; 37.Database issue: D464-70.
EcoCyc: a comprehensive view of Escherichia coli biology
Keseler IM, Bonavides-Martínez C, Collado-Vides J, Gama-Castro S, Gunsalus RP, Johnson DA, Krummenacker M, Nolan LM, Paley S, Paulsen IT, Peralta-Gil M, Santos-Zavaleta A, Shearer AG, Karp PD
PMID: 18974181
Methods in molecular biology (Clifton, N.J.). 2009-01-01; 548.263-82.
Plant genome annotation methods
Ouyang S, Thibaud-Nissen F, Childs KL, Zhu W, Buell CR
PMID: 19347655
PloS one. 2009-01-01; 4.5: e5519.
Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism
Tsolis RM, Seshadri R, Santos RL, Sangari FJ, Lobo JM, de Jong MF, Ren Q, Myers G, Brinkac LM, Nelson WC, Deboy RT, Angiuoli S, Khouri H, Dimitrov G, Robinson JR, Mulligan S, Walker RL, Elzer PE, Hassan KA, Paulsen IT
PMID: 19436743
PloS one. 2009-01-01; 4.5: e4207.
Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum
Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA
PMID: 19148287
Future virology. 2009-01-01; 4.1: 47-53.
Advancing full length genome sequencing for human RNA viral pathogens
Djikeng A, Spiro D
PMID: 19884976
Genome biology. 2009-01-01; 10.3: R32.
Evaluation of next generation sequencing platforms for population targeted sequencing studies
Harismendy O, Ng PC, Strausberg RL, Wang X, Stockwell TB, Beeson KY, Schork NJ, Murray SS, Topol EJ, Levy S, Frazer KA
PMID: 19327155
Medical mycology. 2009-01-01; 47 Suppl 1.S34-41.
Using aCGH to study intraspecific genetic variability in two pathogenic molds, Aspergillus fumigatus and Aspergillus flavus
Fedorova ND, Harris S, Chen D, Denning DW, Yu J, Cotty PJ, Nierman WC
PMID: 19291596
Methods in molecular biology (Clifton, N.J.). 2009-01-01; 548.223-45.
Analysis of protein-protein interactions using array-based yeast two-hybrid screens
Rajagopala SV, Uetz P
PMID: 19521828
Molecular systems biology. 2009-01-01; 5.330.
A systems biology tour de force for a near-minimal bacterium
Glass JI, Hutchison CA, Smith HO, Venter JC
PMID: 19953084

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