Publications

PLoS computational biology. 2012-01-01; 8.6: e1002358.
Metabolic reconstruction for metagenomic data and its application to the human microbiome
Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C
PMID: 22719234
PloS one. 2012-01-01; 7.5: e32118.
Analyses of the microbial diversity across the human microbiome
Li K, Bihan M, Yooseph S, Methé BA
PMID: 22719823
Nucleic acids research. 2012-01-01; 40.Database issue: D593-8.
ViPR: an open bioinformatics database and analysis resource for virology research
Pickett BE, Sadat EL, Zhang Y, Noronha JM, Squires RB, Hunt V, Liu M, Kumar S, Zaremba S, Gu Z, Zhou L, Larson CN, Dietrich J, Klem EB, Scheuermann RH
PMID: 22006842
PLoS genetics. 2012-01-01; 8.7: e1002626.
Cell contact-dependent outer membrane exchange in myxobacteria: genetic determinants and mechanism
Pathak DT, Wei X, Bucuvalas A, Haft DH, Gerloff DL, Wall D
PMID: 22511878
Frontiers in plant science. 2012-01-01; 3.172.
Unleashing the genome of brassica rapa
Tang H, Lyons E
PMID: 22866056
PloS one. 2012-01-01; 7.3: e34581.
Decreased serologic response in vaccinated military recruits during 2011 correspond to genetic drift in concurrent circulating pandemic A/H1N1 viruses
Faix DJ, Hawksworth AW, Myers CA, Hansen CJ, Ortiguerra RG, Halpin R, Wentworth D, Pacha LA, Schwartz EG, Garcia SM, Eick-Cost AA, Clagett CD, Khurana S, Golding H, Blair PJ
PMID: 22514639
Frontiers in microbiology. 2012-01-01; 3.375.
Influence of vitamin B auxotrophy on nitrogen metabolism in eukaryotic phytoplankton
Bertrand EM, Allen AE
PMID: 23091473
PloS one. 2012-01-01; 7.5: e33604.
Transcriptional and proteomic analysis of the Aspergillus fumigatus ΔprtT protease-deficient mutant
Hagag S, Kubitschek-Barreira P, Neves GW, Amar D, Nierman W, Shalit I, Shamir R, Lopes-Bezerra L, Osherov N
PMID: 22514608
mBio. 2012-01-01; 3.5:
Inhibition of LpxC protects mice from resistant Acinetobacter baumannii by modulating inflammation and enhancing phagocytosis
Lin L, Tan B, Pantapalangkoor P, Ho T, Baquir B, Tomaras A, Montgomery JI, Reilly U, Barbacci EG, Hujer K, Bonomo RA, Fernandez L, Hancock RE, Adams MD, French SW, Buslon VS, Spellberg B
PMID: 23033474
PloS one. 2012-01-01; 7.5: e39315.
Evaluation of 16S rDNA-based community profiling for human microbiome research
Ward DV, Gevers D, Giannoukos G, Earl AM, Methé BA, Sodergren E, Feldgarden M, Ciulla DM, Tabbaa D, Arze C, Appelbaum E, Aird L, Anderson S, Ayvaz T, Belter E, Bihan M, Bloom T, Crabtree J, Courtney L, Carmichael L, Dooling D, Erlich RL, Farmer C, Fulton L, Fulton R, Gao H, Gill JA, Haas BJ, Hemphill L, Hall O, Hamilton SG, Hepburn TA, Lennon NJ, Joshi V, Kells C, Kovar CL, Kalra D, Li K, Lewis L, Leonard S, Muzny DM, Mardis E, Mihindukulasuriya K, Magrini V, O'Laughlin M, Pohl C, Qin X, Ross K, Ross MC, Rogers YH, Singh N, Shang Y, Wilczek-Boney K, Wortman JR, Worley KC, Youmans BP, Yooseph S, Zhou Y, Schloss PD, Wilson R, Gibbs RA, Nelson KE, Weinstock G, DeSantis TZ, Petrosino JF, Highlander SK, Birren BW
PMID: 22720093

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