Publications

Hepatology (Baltimore, Md.). 2023-01-13;
Any alcohol use in NAFLD patients is associated with significant changes to the intestinal virome
Hsu CL, Lang S, Demir M, Fouts DE, Stärkel P, Schnabl B
PMID: 36631002
Nucleic acids research. 2023-01-06; 51.D1: D603-D610.
MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters
Terlouw BR, Blin K, Navarro-Muñoz JC, Avalon NE, Chevrette MG, Egbert S, Lee S, Meijer D, Recchia MJJ, Reitz ZL, van Santen JA, Selem-Mojica N, Tørring T, Zaroubi L, Alanjary M, Aleti G, Aguilar C, Al-Salihi SAA, Augustijn HE, Avelar-Rivas JA, Avitia-Domínguez LA, Barona-Gómez F, Bernaldo-Agüero J, Bielinski VA, Biermann F, Booth TJ, Carrion Bravo VJ, Castelo-Branco R, Chagas FO, Cruz-Morales P, Du C, Duncan KR, Gavriilidou A, Gayrard D, Gutiérrez-García K, Haslinger K, Helfrich EJN, van der Hooft JJJ, Jati AP, Kalkreuter E, Kalyvas N, Kang KB, Kang KB, Kautsar S, Kim W, Kunjapur AM, Li YX, Lin GM, Loureiro C, Louwen JJR, Louwen NLL, Lund G, Parra J, Philmus B, Pourmohsenin B, Pronk LJU, Rego A, Rex DAB, Robinson S, Rosas-Becerra LR, Roxborough ET, Schorn MA, Scobie DJ, Singh KS, Sokolova N, Tang X, Udwary D, Vigneshwari A, Vind K, Vromans SPJM, Waschulin V, Williams SE, Winter JM, Witte TE, Xie H, Yang D, Yu J, Zdouc M, Zhong Z, Collemare J, Linington RG, Weber T, Medema MH
PMID: 36399496
Nucleic acids research. 2023-01-06; 51.D1: D678-D689.
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR
Olson RD, Assaf R, Brettin T, Conrad N, Cucinell C, Davis JJ, Dempsey DM, Dickerman A, Dietrich EM, Kenyon RW, Kuscuoglu M, Lefkowitz EJ, Lu J, Machi D, Macken C, Mao C, Niewiadomska A, Nguyen M, Olsen GJ, Overbeek JC, Parrello B, Parrello V, Porter JS, Pusch GD, Shukla M, Singh I, Stewart L, Tan G, Thomas C, VanOeffelen M, Vonstein V, Wallace ZS, Warren AS, Wattam AR, Xia F, Yoo H, Zhang Y, Zmasek CM, Scheuermann RH, Stevens RL
PMID: 36350631
Nature biotechnology. 2023-01-01; 41.1: 9-13.
Exploring the value of a global gene drive project registry
Taitingfong RI, Triplett C, Vásquez VN, Rajagopalan RM, Raban R, Roberts A, Terradas G, Baumgartner B, Emerson C, Gould F, Okumu F, Schairer CE, Bossin HC, Buchman L, Campbell KJ, Clark A, Delborne J, Esvelt K, Fisher J, Friedman RM, Gronvall G, Gurfield N, Heitman E, Kofler N, Kuiken T, Kuzma J, Manrique-Saide P, Marshall JM, Montague M, Morrison AC, Opesen CC, Phelan R, Piaggio A, Quemada H, Rudenko L, Sawadogo N, Smith R, Tuten H, Ullah A, Vorsino A, Windbichler N, Akbari OS, Long K, Lavery JV, Evans SW, Tountas K, Bloss CS
PMID: 36522496
Plant direct. 2022-12-26; 6.12: e472.
In vivo localization of iron starvation induced proteins under variable iron supplementation regimes in Phaeodactylum tricornutum
Kazamia E, Mach J, McQuaid JB, Gao X, Coale TH, Malych R, Camadro JM, Lesuisse E, Allen AE, Bowler C, Sutak R
PMID: 36582220
PLoS pathogens. 2022-12-21; 18.12: e1011020.
A multiomics analysis of direct interkingdom dynamics between influenza A virus and Streptococcus pneumoniae uncovers host-independent changes to bacterial virulence fitness
Platt MP, Lin YH, Penix T, Wiscovitch-Russo R, Vashee I, Mares CA, Rosch JW, Yu Y, Gonzalez-Juarbe N
PMID: 36542660
Scientific reports. 2022-12-20; 12.1: 22013.
Author Correction: Sampling from four geographically divergent young female populations demonstrates forensic geolocation potential in microbiomes
Clarke T, Brinkac L, Greco C, Alleyne AT, Carrasco P, Inostroza C, Tau T, Wisitrasameewong W, Torralba MG, Nelson K, Singh H
PMID: 36539474
STAR protocols. 2022-12-16; 3.4: 101835.
A high-throughput SARS-CoV-2 pseudovirus multiplex neutralization assay
Sievers BL, Gelbart T, Tan GS
PMID: 36595901
Scientific reports. 2022-12-15; 12.1: 20847.
Impact of diet on human nutrition, immune response, gut microbiome, and cognition in an isolated and confined mission environment
Douglas GL, DeKerlegand D, Dlouhy H, Dumont-Leblond N, Fields E, Heer M, Krieger S, Mehta S, Rooney BV, Torralba MG, Whiting SE, Crucian B, Lorenzi H, Smith SM, Young M, Zwart SR
PMID: 36522361
Journal of virus eradication. 2022-12-15; 8.4: 100310.
Incentivized self-vaccination for global measles eradication
Sievers BL, Sievers RE, Sievers EL
PMID: 36578361

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