Publications

Bioinformatics (Oxford, England). 2005-08-01; 21.15: 3308-11.

CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data

Margolin AA, Greshock J, Naylor TL, Mosse Y, Maris JM, Bignell G, Saeed AI, Quackenbush J, Weber BL

PMID: 15905276

Abstract

This synopsis provides an overview of array-based comparative genomic hybridization data display, abstraction and analysis using CGHAnalyzer, a software suite, designed specifically for this purpose. CGHAnalyzer can be used to simultaneously load copy number data from multiple platforms, query and describe large, heterogeneous datasets and export results. Additionally, CGHAnalyzer employs a host of algorithms for microarray analysis that include hierarchical clustering and class differentiation.

Metrics